BgReference

Description

BgReference is a library to fast retrive Genome Reference partial sequences.

Instalation

conda install -c conda-forge -c bbglab bgreference

or

pip install bgreference

Examples

from bgreference import hg19, hg38
# Get 10 bases from chromosome one build hg19
hg19('1', 12345, size=10)

# Get the sequence of the whole chromosome
hg19('1',(1), size=None)

# You can use synonymous sequence names
hg19(2, 23456)
hg19('2', 23456)
hg19('chr2', 23456)

hg19('MT', 234, size=3)
hg19('chrM', 234, size=3)
hg19('chrMT', 234, size=3)

Repository

Click here to see the repository of BgReference.

Reference

• Jordi Deu-Pons
• Miguel Grau
• Paula Gomis