CellRanger¶

CellRanger is a software package to perform data pre-processing for single cell data. Amongst multiple functions, the main steps the pipeline performs:

Sample demultiplexing
barcode processing
single cell 3' and 5' gene counting

installation¶

To install CellRanger, follow the instructions provided in the following link

After running CellRanger, processed files can be used using analytical packages such as ArchR or Seurat

Reference¶

Axel Rosendahl Huber