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Encode Epigenetic data

Cluster location: /workspace/datasets/encode/

Description

Encode genomic data downloaded from https://www.encodeproject.org/

Contents:

bigWig files of epigenetic tracks across the genome

Reference genome: hg38

Chromatin files (801 files)

  • Are large-scale chromatin modifications such as:
  • H3K27ac
  • H3K9me2

Full download link present in chromatin_files.txt Metadata: Chromatin_metadata.tsv

TFs (442 files)

Although the name does not fully characterize its content this folder contains: - CTCF-sites - ATAC sequencing - DNase-seq

Metadata: TFs_metadata_2022_12_12.tsv

References

Information for citing the most recent version of the Encode dataset: https://www.encodeproject.org/help/citing-encode/

Author

Axel Rosendahl Huber - 16-03-2023